Friday, November 11, 2011

Running_Hadoop_On_Ubuntu_Linux_(Single-Node_Cluster)


What we want to do

In this short tutorial, I will describe the required steps for setting up a single-node Hadoop cluster using the Hadoop Distributed File System (HDFS) on Ubuntu Linux.
Hadoop is a framework written in Java for running applications on large clusters of commodity hardware and incorporates features similar to those of the Google File System and of MapReduceHDFS is a highly fault-tolerant distributed file system and like Hadoop designed to be deployed on low-cost hardware. It provides high throughput access to application data and is suitable for applications that have large data sets.
The main goal of this tutorial is to get a simple Hadoop installation up and running so that you can play around with the software and learn more about it.
This tutorial has been tested with the following software versions:
You can find the time of the last document update at the very bottom of this page.

Prerequisites

Sun Java

Hadoop requires a working Java 1.6.x (aka Java 6) installation. Use the package sun-java6-jdk and adjust the paths described below as needed.
Install Sun's Java Development Kit (JDK) via Synaptic (System > Administration > Synaptic Package Manager) or via apt-get. Install the package
   sun-java6-jdk
for the full JDK which will be placed in a location such as /usr/lib/jvm/java-6-sun-1.6.0.14 with a symbolic link /usr/lib/jvm/java-6-sun set up to point to this version.
After installation, check if Sun's JDK is on top of /etc/jvm. For example, mine looks like this:
  # /etc/jvm
  #
  # This file defines the default system JVM search order. Each
  # JVM should list their JAVA_HOME compatible directory in this file.
  # The default system JVM is the first one available from top to
  # bottom.

  #this an example file for a 64 bit ubuntu server
  /usr/lib/jvm/java-6-sun
  /usr/lib/jvm/java-6-openjdk
  /usr/lib/jvm/ia32-java-6-sun

Adding a dedicated Hadoop system user

We will use a dedicated Hadoop user account for running Hadoop. While that's not required it is recommended because it helps to separate the Hadoop installation from other software applications and user accounts running on the same machine (think: security, permissions, backups, etc).
  $ sudo addgroup hadoop
  $ sudo adduser --ingroup hadoop hadoop
This will add the user hadoop and the group hadoop to your local machine.

Configuring SSH

Hadoop requires SSH access to manage its nodes, i.e. remote machines plus your local machine if you want to use Hadoop on it (which is what we want to do in this short tutorial). For our single-node setup of Hadoop, we therefore need to configure SSH access to localhost for the hadoop user we create in the previous section.
I assume that you have SSH up and running on your machine and configured it to allow SSH public key authentication. If not, there are several guides available.
First, we have to generate an SSH key for the <tt>hadoop</tt> user.
  noll@ubuntu:~$ su - hadoop
  hadoop@ubuntu:~$ ssh-keygen -t rsa -P ""
  Generating public/private rsa key pair.
  Enter file in which to save the key (/home/hadoop/.ssh/id_rsa):
  Created directory '/home/hadoop/.ssh'.
  Your identification has been saved in /home/hadoop/.ssh/id_rsa.
  Your public key has been saved in /home/hadoop/.ssh/id_rsa.pub.
  The key fingerprint is:
  9d:47:ab:d7:22:54:f0:f9:b9:3b:64:93:12:75:81:27 hadoop@ubuntu
  hadoop@ubuntu:~$
The second line will create an RSA key pair with an empty password. Generally, using an empty password is not recommended, but in this case it is needed to unlock the key without your interaction (you don't want to enter the passphrase every time Hadoop interacts with its nodes).
Second, you have to enable SSH access to your local machine with this newly created key.
  hadoop@ubuntu:~$ cat $HOME/.ssh/id_rsa.pub >> $HOME/.ssh/authorized_keys
The final step is to test the SSH setup by connecting to your local machine with the hadoop user. The step is also needed to save your local machine's host key fingerprint to the hadoop user'sknown_hosts file. If you have any special SSH configuration for your local machine like a non-standard SSH port, you can define host-specific SSH options in $HOME/.ssh/config (see man ssh_config for more information).
  hadoop@ubuntu:~$ ssh localhost
  The authenticity of host 'localhost (127.0.0.1)' can't be established.
  RSA key fingerprint is 76:d7:61:86:ea:86:8f:31:89:9f:68:b0:75:88:52:72.
  Are you sure you want to continue connecting (yes/no)? yes
  Warning: Permanently added 'localhost' (RSA) to the list of known hosts.
  Ubuntu 7.04
  ...
  hadoop@ubuntu:~$
If the SSH connect should fail, these general tips might help:
  • Enable debugging with ssh -vvv localhost and investigate the error in detail.
  • Check the SSH server configuration in /etc/ssh/sshd_config, in particular the options PubkeyAuthentication (which should be set to yes) and AllowUsers (if this option is active, add the <tt>hadoop</tt> user to it). If you made any changes to the SSH server configuration file, you can force a configuration reload with sudo /etc/init.d/ssh reload.

Disabling IPv6

I have not found out yet how to configure Hadoop to listen on all IPv4 (again: IPv4) network interfaces. Using 0.0.0.0 for the various networking-related Hadoop configuration options will result in Hadoop binding to the IPv6 addresses on my Ubuntu box.
As a workaround (and realizing that there's no practical point in enabling IPv6 on a box when you are not connected to any IPv6 network), I simply disabled IPv6 on my Ubuntu machine.
To disable IPv6 on Ubuntu Linux, open /etc/modprobe.d/blacklist in the editor of your choice and add the following lines to the end of the file:
  # disable IPv6
  blacklist ipv6
You have to reboot your machine in order to make the changes take effect.

Hadoop

Installation

You have to download Hadoop from the Apache Download Mirrors and extract the contents of the Hadoop package to a location of your choice. I picked /usr/local/hadoop. Make sure to change the owner of all the files to the hadoop user and group, for example:
  $ cd /usr/local
  $ sudo tar xzf hadoop-0.14.2.tar.gz
  $ sudo mv hadoop-0.14.2 hadoop
  $ sudo chown -R hadoop:hadoop hadoop
(just to give you the idea, YMMV - personally, I create a symlink from hadoop-0.14.2 to hadoop)

Configuration

Our goal in this tutorial is a single-node setup of Hadoop. More information of what we do in this section is available at GettingStartedWithHadoop.

hadoop-env.sh

The only required environment variable we have to configure for Hadoop in this tutorial is JAVA_HOME. Open <HADOOP_INSTALL>/conf/hadoop-env.sh in the editor of your choice (if you used the installation path in this tutorial, the full path is /usr/local/hadoop/conf/hadoop-env.sh) and set the JAVA_HOME environment variable to the Sun JDK/JRE directory.
Change
  # The java implementation to use.  Required.
  # export JAVA_HOME=/usr/lib/j2sdk1.6-sun
to
  # The java implementation to use.  Required.
  export JAVA_HOME=/usr/lib/jvm/java-6-sun
Alternatively, you could set up the Java home value in bash, for every user. Do this in /etc/bash.bashrc
  export JAVA_HOME=/usr/lib/jvm/java-6-sun
  export JDK_HOME=$JAVA_HOME
  export PATH=$PATH:$JAVA_HOME/bin

hadoop-site.xml

Any site-specific configuration of Hadoop is configured in <HADOOP_INSTALL>/conf/hadoop-site.xml. Here we will configure the directory where Hadoop will store its data files, the ports it listens to, etc. Our setup will use Hadoop's Distributed File System, HDFS, even though our little "cluster" only contains our single local machine.
You can leave the settings below as is with the exception of the hadoop.tmp.dir variable which you have to change to the directory of your choice, for example /usr/local/hadoop-datastore/hadoop-${user.name}. Hadoop will expand ${user.name} to the system user which is running Hadoop, so in our case this will be hadoop and thus the final path will be /usr/local/hadoop-datastore/hadoop-hadoop.
Note: Depending on your choice of location, you might have to create the directory manually with sudo mkdir /your/path; sudo chown hadoop:hadoop /your/path in case the hadoop user does not have the required permissions to do so (otherwise, you will see a java.io.IOException when you try to format the name node in the next section).
<?xml version="1.0"?>
<?xml-stylesheet type="text/xsl" href="configuration.xsl"?>

<!-- Put site-specific property overrides in this file. -->

<configuration>

<property>
  <name>hadoop.tmp.dir</name>
  <value>/your/path/to/hadoop/tmp/dir/hadoop-${user.name}</value>
  <description>A base for other temporary directories.</description>
</property>

<property>
  <name>fs.default.name</name>
  <value>hdfs://localhost:54310</value>
  <description>The name of the default file system.  A URI whose
  scheme and authority determine the FileSystem implementation.  The
  uri's scheme determines the config property (fs.SCHEME.impl) naming
  the FileSystem implementation class.  The uri's authority is used to
  determine the host, port, etc. for a FileSystem.</description>
</property>

<property>
  <name>mapred.job.tracker</name>
  <value>localhost:54311</value>
  <description>The host and port that the MapReduce job tracker runs
  at.  If "local", then jobs are run in-process as a single map
  and reduce task.
  </description>
</property>

<property>
  <name>dfs.replication</name>
  <value>1</value>
  <description>Default block replication.
  The actual number of replications can be specified when the file is created.
  The default is used if replication is not specified in create time.
  </description>
</property>

</configuration>
See GettingStartedWithHadoop and the documentation in Hadoop's API Overview if you have any questions about Hadoop's configuration options.

Formatting the name node

The first step to starting up your Hadoop installation is formatting the Hadoop filesystem which is implemented on top of the local filesystem of your "cluster" (which includes only your local machine if you followed this tutorial). You need to do this the first time you set up a Hadoop cluster. Do not format a running Hadoop filesystem, this will cause all your data to be erased.
To format the filesystem (which simply initializes the directory specified by the dfs.name.dir variable), run the command
  hadoop@ubuntu:~$ <HADOOP_INSTALL>/hadoop/bin/hadoop namenode -format
The output will look like this:
  hadoop@ubuntu:/usr/local/hadoop$ bin/hadoop namenode -format
  07/09/21 12:00:25 INFO dfs.NameNode: STARTUP_MSG:
  /***********************************************************
  STARTUP_MSG: Starting NameNode
  STARTUP_MSG:   host = ubuntu/127.0.0.1
  STARTUP_MSG:   args = [-format]
  ***********************************************************/
  07/09/21 12:00:25 INFO dfs.Storage: Storage directory [...] has been successfully formatted.
  07/09/21 12:00:25 INFO dfs.NameNode: SHUTDOWN_MSG:
  /***********************************************************
  SHUTDOWN_MSG: Shutting down NameNode at ubuntu/127.0.0.1
  ***********************************************************/
  hadoop@ubuntu:/usr/local/hadoop$

Starting your single-node cluster

Run the command:
  hadoop@ubuntu:~$ <HADOOP_INSTALL>/bin/start-all.sh
This will startup a Namenode, Datanode, Jobtracker and a Tasktracker on your machine.
The output will look like this:
  hadoop@ubuntu:/usr/local/hadoop$ bin/start-all.sh 
  starting namenode, logging to /usr/local/hadoop/bin/../logs/hadoop-hadoop-namenode-ubuntu.out
  localhost: starting datanode, logging to /usr/local/hadoop/bin/../logs/hadoop-hadoop-datanode-ubuntu.out
  localhost: starting secondarynamenode, logging to /usr/local/hadoop/bin/../logs/hadoop-hadoop-secondarynamenode-ubuntu.out
  starting jobtracker, logging to /usr/local/hadoop/bin/../logs/hadoop-hadoop-jobtracker-ubuntu.out
  localhost: starting tasktracker, logging to /usr/local/hadoop/bin/../logs/hadoop-hadoop-tasktracker-ubuntu.out
  hadoop@ubuntu:/usr/local/hadoop$
A nifty tool for checking whether the expected Hadoop processes are running is jps (part of Sun's Java since v1.5.0). See also HowToDebugMapReducePrograms.
  hadoop@sea:/usr/local/hadoop/$ jps
  19811 TaskTracker
  19674 SecondaryNameNode
  19735 JobTracker
  19497 NameNode
  20879 TaskTracker$Child
  21810 Jps
You can also check with netstat if Hadoop is listening on the configured ports.
  hadoop@ubuntu:~$ sudo netstat -plten | grep java
  tcp  0  0 0.0.0.0:50050    0.0.0.0:*   LISTEN   1001   86234   23634/java          
  tcp  0  0 127.0.0.1:54310  0.0.0.0:*   LISTEN   1001   85800   23317/java          
  tcp  0  0 127.0.0.1:54311  0.0.0.0:*   LISTEN   1001   86383   23543/java          
  tcp  0  0 0.0.0.0:50090    0.0.0.0:*   LISTEN   1001   86119   23478/java          
  tcp  0  0 0.0.0.0:50060    0.0.0.0:*   LISTEN   1001   86233   23634/java          
  tcp  0  0 0.0.0.0:50030    0.0.0.0:*   LISTEN   1001   86393   23543/java          
  tcp  0  0 0.0.0.0:50070    0.0.0.0:*   LISTEN   1001   85964   23317/java          
  tcp  0  0 0.0.0.0:50010    0.0.0.0:*   LISTEN   1001   86045   23389/java          
  tcp  0  0 0.0.0.0:50075    0.0.0.0:*   LISTEN   1001   86102   23389/java          
  hadoop@ubuntu:~$
If there are any errors, examine the log files in the <HADOOP_INSTALL>/logs/ directory.

Stopping your single-node cluster

Run the command
  hadoop@ubuntu:~$ <HADOOP_INSTALL>/bin/stop-all.sh
to stop all the daemons running on your machine.
Exemplary output:
  hadoop@ubuntu:/usr/local/hadoop$ bin/stop-all.sh 
  stopping jobtracker
  localhost: Ubuntu 7.04
  localhost: stopping tasktracker
  stopping namenode
  localhost: Ubuntu 7.04
  localhost: stopping datanode
  localhost: Ubuntu 7.04
  localhost: stopping secondarynamenode
  hadoop@ubuntu:/usr/local/hadoop$

Running a MapReduce job

We will now run your first HadoopMapReduce job. We will use the WordCount example job which reads text files and counts how often words occur. The input is text files and the output is text files, each line of which contains a word and the count of how often it occurred, separated by a tab. More information of what happens behind the scenes is available at the WordCount article.

Download example input data

We will use three ebooks from Project Gutenberg for this example:
Download each ebook as plain text files in us-ascii encoding and store the uncompressed files in a temporary directory of choice, for example /tmp/gutenberg.
  hadoop@ubuntu:~$ ls -l /tmp/gutenberg/
  total 3592
  -rw-r--r-- 1 hadoop hadoop  674425 2007-01-22 12:56 20417-8.txt
  -rw-r--r-- 1 hadoop hadoop 1423808 2006-08-03 16:36 7ldvc10.txt
  -rw-r--r-- 1 hadoop hadoop 1561677 2004-11-26 09:48 ulyss12.txt
  hadoop@ubuntu:~$

Restart the Hadoop cluster

Restart your Hadoop cluster if it's not running already.
  hadoop@ubuntu:~$ <HADOOP_INSTALL>/bin/start-all.sh

Copy local example data to HDFS

Before we run the actual MapReduce job, we first have to copy the files from our local file system to Hadoop's HDFS. See ImportantConcepts for more information about this step.
  hadoop@ubuntu:/usr/local/hadoop$ bin/hadoop dfs -copyFromLocal /tmp/gutenberg gutenberg
  hadoop@ubuntu:/usr/local/hadoop$ bin/hadoop dfs -ls
  Found 1 items
  /user/hadoop/gutenberg  <dir>
  hadoop@ubuntu:/usr/local/hadoop$ bin/hadoop dfs -ls gutenberg
  Found 3 items
  /user/hadoop/gutenberg/20417-8.txt      <r 1>   674425
  /user/hadoop/gutenberg/7ldvc10.txt      <r 1>   1423808
  /user/hadoop/gutenberg/ulyss12.txt      <r 1>   1561677

Run the MapReduce job

Now, we actually run the WordCount example job.
  hadoop@ubuntu:/usr/local/hadoop$ bin/hadoop jar hadoop-0.14.2-examples.jar wordcount gutenberg gutenberg-output
This command will read all the files in the HDFS directory gutenberg, process it, and store the result in the HDFS directory gutenberg-output.
Exemplary output of the previous command in the console:
  hadoop@ubuntu:/usr/local/hadoop$ bin/hadoop jar hadoop-0.14.2-examples.jar wordcount gutenberg gutenberg-output
  07/09/21 13:00:30 INFO mapred.FileInputFormat: Total input paths to process : 3
  07/09/21 13:00:31 INFO mapred.JobClient: Running job: job_200709211255_0001
  07/09/21 13:00:32 INFO mapred.JobClient:  map 0% reduce 0%
  07/09/21 13:00:42 INFO mapred.JobClient:  map 66% reduce 0%
  07/09/21 13:00:47 INFO mapred.JobClient:  map 100% reduce 22%
  07/09/21 13:00:54 INFO mapred.JobClient:  map 100% reduce 100%
  07/09/21 13:00:55 INFO mapred.JobClient: Job complete: job_200709211255_0001
  07/09/21 13:00:55 INFO mapred.JobClient: Counters: 12
  07/09/21 13:00:55 INFO mapred.JobClient:   Job Counters 
  07/09/21 13:00:55 INFO mapred.JobClient:     Launched map tasks=3
  07/09/21 13:00:55 INFO mapred.JobClient:     Launched reduce tasks=1
  07/09/21 13:00:55 INFO mapred.JobClient:     Data-local map tasks=3
  07/09/21 13:00:55 INFO mapred.JobClient:   Map-Reduce Framework
  07/09/21 13:00:55 INFO mapred.JobClient:     Map input records=77637
  07/09/21 13:00:55 INFO mapred.JobClient:     Map output records=628439
  07/09/21 13:00:55 INFO mapred.JobClient:     Map input bytes=3659910
  07/09/21 13:00:55 INFO mapred.JobClient:     Map output bytes=6061344
  07/09/21 13:00:55 INFO mapred.JobClient:     Combine input records=628439
  07/09/21 13:00:55 INFO mapred.JobClient:     Combine output records=103910
  07/09/21 13:00:55 INFO mapred.JobClient:     Reduce input groups=85096
  07/09/21 13:00:55 INFO mapred.JobClient:     Reduce input records=103910
  07/09/21 13:00:55 INFO mapred.JobClient:     Reduce output records=85096
  hadoop@ubuntu:/usr/local/hadoop$ 
Check if the result is successfully stored in HDFS directory gutenberg-output:
  hadoop@ubuntu:/usr/local/hadoop$ bin/hadoop dfs -ls 
  Found 2 items
  /user/hadoop/gutenberg  <dir>
  /user/hadoop/gutenberg-output   <dir>
  hadoop@wind:/usr/local/hadoop$ bin/hadoop dfs -ls gutenberg-output
  Found 1 items
  /user/hadoop/gutenberg-output/part-00000        <r 1>   903193
  hadoop@ubuntu:/usr/local/hadoop$

Retrieve the job result from HDFS

To inspect the file, you can copy it from HDFS to the local file system. Alternatively, you can use the command
  hadoop@ubuntu:/usr/local/hadoop$ bin/hadoop dfs -cat gutenberg-output/part-00000
to read the file directly from HDFS without copying it to the local file system. In this tutorial, we will copy the results to the local file system though.
  hadoop@ubuntu:/usr/local/hadoop$ mkdir /tmp/gutenberg-output
  hadoop@ubuntu:/usr/local/hadoop$ bin/hadoop dfs -copyToLocal gutenberg-output/part-00000 /tmp/gutenberg-output
  hadoop@ubuntu:/usr/local/hadoop$ head /tmp/gutenberg-output/part-00000 
  "(Lo)cra"       1
  "1490   1
  "1498," 1
  "35"    1
  "40,"   1
  "A      2
  "AS-IS".        2
  "A_     1
  "Absoluti       1
  "Alack! 1
  hadoop@ubuntu:/usr/local/hadoop$
Note that in this specific output the quote signs (") enclosing the words in the head output above have not been inserted by Hadoop. They are the result of the word tokenizer used in the WordCountexample, and in this case they matched the beginning of a quote in the ebook texts. Just inspect the part-00000 file further to see it for yourself.

Hadoop Web Interfaces

Hadoop comes with several web interfaces which are by default (see conf/hadoop-default.xml) available at these locations:
These web interfaces provide concise information about what's happening in your Hadoop cluster. You might want to give them a try.

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